GLPBio

Cy5-DBCO

Catalog No.: GC64831Purity:>97.00%Synonyms: DBCO-Sulfo-Cy5
Cy5-DBCO is a bioorthogonal fluorescent probe that combines the near-infrared dye Cy5 with dibenzocyclooctyne (DBCO) (Ex=635nm, Em=650-700nm).

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Cy5-DBCO
Cas No.: 1564286-24-3
1mgIn Stock
$232.00
1
5mgIn Stock
$456.00
1

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Description

Cy5-DBCO is a bioorthogonal fluorescent probe that combines the near-infrared dye Cy5 with dibenzocyclooctyne (DBCO) (Ex=635nm, Em=650-700nm). Cy5-DBCO enables efficient and specific biomolecule labeling through a copper-free click chemistry reaction between the DBCO group and azides. Cy5-DBCO is used in applications such as bioimaging, protein labeling, cell tracing, and drug delivery system research[1-4].

References:
[1] Song S, Shim MK, Lim S, et al. In Situ One-Step Fluorescence Labeling Strategy of Exosomes via Bioorthogonal Click Chemistry for Real-Time Exosome Tracking In Vitro and In Vivo. Bioconjug Chem. 2020 May 20;31(5):1562-1574.
[2] Zhu L, Xu Y, Wei X, et al. Coupling Aptamer-based Protein Tagging with Metabolic Glycan Labeling for In Situ Visualization and Biological Function Study of Exosomal Protein-Specific Glycosylation. Angew Chem Int Ed Engl. 2021 Aug 9;60(33):18111-18115.
[3] Li L, Wang F, Mo S, et al. A Spatially Distributed Microneedle System for Bioorthogonal T Cell-Guided Cancer Therapy. Adv Sci (Weinh). 2025 Apr;12(13):e2416841.
[4] Xue Y, Li J, Chen D, et al. Observation of structural switch in nascent SAM-VI riboswitch during transcription at single-nucleotide and single-molecule resolution. Nat Commun. 2023 Apr 22;14(1):2320.

Protocol

Method for Cy5-DBCO Cell Labeling and Tracing[1]

This protocol is adapted from research data and provided for reference only. Adjustments may be necessary based on specific experimental requirements.

1. Reagent Preparation: Dissolve tetraacetylated N-azidoacetyl-D-mannosamine (Ac4ManNAz) in complete cell culture medium to prepare a 50μM working solution. Dissolve Cy5-DBCO in a suitable buffer (DPBS, pH=7.4) to prepare a working concentration (20μM for in vitro experiments, 25μM for in vivo injection).

2. Target Cell Azide Labeling: Seed target cells at an appropriate density and culture them in complete medium containing 50μM Ac4ManNAz for 3 days to metabolically introduce azide groups onto the cell surface.

3. Cy5-DBCO Labeling and Detection (In Vitro): Wash the Ac4ManNAz-treated cells twice with DPBS (pH=7.4). Add the Cy5-DBCO working solution (20μM) and incubate at 37°C for 1 hour. Wash the cells thoroughly with DPBS to remove unbound probe. Subsequently, fix the cells (with formaldehyde-glutaraldehyde fixative), stain the nuclei (with DAPI), and perform fluorescence imaging analysis using a confocal laser scanning microscope (Ex=635nm, Em=650-700nm). Quantitative analysis can also be performed using flow cytometry.

4. Cy5-DBCO Labeling and Detection (In Vivo): Directly inject target cells treated with Ac4ManNAz for 3 days into the target organ of a live animal. Three days after cell transplantation, inject the Cy5-DBCO solution (25μM, 200μL) into the mouse via the tail vein. Four hours after probe injection, use an in vivo imaging system for whole-body fluorescence imaging to observe specific signals at the target organ. Alternatively, dissect the organ for ex vivo imaging using a fluorescence imaging station or prepare frozen sections for microscopic observation.

Precautions:

(1) Unreacted, free Cy5-DBCO is primarily cleared via the renal route within 4 hours post-injection, which helps reduce background signal.

(2) For your safety and health, please wear a lab coat and disposable gloves during operation.

References:
[1] Kang SW, Lee S, Na JH, et al. Cell labeling and tracking method without distorted signals by phagocytosis of macrophages. Theranostics. 2014 Feb 12;4(4):420-31.

Product Documents

Purity:>97.00%Appearance:A solid

Chemical Properties

CAS No.
1564286-24-3
Synonyms
DBCO-Sulfo-Cy5
Molecular Formula
C52H56N4O11S3
Molecular Weight
1009.22
Solubility
DMSO : 62.5 mg/mL (61.93 mM; Need ultrasonic); H2O : ≥ 10 mg/mL (9.91 mM)
Storage
Store at -20°C
General tips
Select a suitable solvent according to the product solubility data. Once prepared, aliquot the stock solution to avoid repeated freeze-thaw cycles.
Use stock solutions within 6 months when stored at -80°C or within 1 month when stored at -20°C.
To improve solubility, warm the tube to 37°C and sonicate it for an appropriate period.
Shipping Condition
Evaluation samples are shipped with blue ice. Other available sizes are shipped at room temperature or with blue ice upon request.

CalculatorsMolarity / Dilution / Molecular Weight / Unit Conversion / In Vivo Formulation / Solubility

g/mol

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