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Hoechst 33342 analog 2

Catalog No.GC36245 Copy One-Click Copy Product Info

Hoechst 33342 analog 2 is an analog of Hoechst 33342 dye, used for fluorescent staining of cellular DNA. The excitation/emission light is 350/460nm respectively.

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Hoechst 33342 analog 2 Chemical Structure

Cas No.: 106050-84-4

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5mg
$324.00
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10mg
$464.00
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50mg
$1,391.00
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Sample solution is provided at 25 µL, 10mM.



Description of Hoechst 33342 analog 2

Hoechst 33342 analog 2 is an analog of Hoechst 33342 dye. Hoechst 33342 is a nuclear dye that binds to the grooves in the DNA double strands. Hoechst 33342 dye is also used to differentiate between normal cells, apoptotic cells, and necrotic cells. The nuclei of normal cells are round and uniformly stained, but during mitosis, the nuclei are also condensed, and DNA forms two parallel lines when chromosomes are separated; in apoptotic cells, due to the condensation of DNA, the nuclei are usually fragmented and stained more Strong; the DNA in necrotic cells is not concentrated, and the edges of the nucleus are unclear[1].

Hoechst dyes can also be used to monitor cell viability by tracking changes in their emission spectra. As slightly groove-binding DNA stains with AT selectivity, Hoechst dyes are able to bind to all nucleic acids, but they show greater fluorescence enhancement for AT-rich double-stranded DNA strands compared to GC-rich strands[2]. This property has been used to identify Q bands in chromosomes, which are AT base pair-rich regions that fluoresce brightly when stained with quinacrine dye[3].
References:
[1]. Lisa C Crowley, Brooke J Marfell , Nigel J Waterhouse. Analyzing Cell Death by Nuclear Staining with Hoechst 33342. 2016 Sep 1;2016(9). doi: 10.1101/pdb.prot087205.

[2]. Portugal J, Waring MJ. Assignment of DNA binding sites for 4′, 6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression. 1988 Feb 28;949(2):158-68.

[3]. Weisblum B, Haenssler E. Fluorometric properties of the bibenzimidazole derivative Hoechst 33258, a fluorescent probe specific for AT concentration in chromosomal DNA. Chromosoma. 1974 Sep;46(3):255-60.

Protocol of Hoechst 33342 analog 2

This plan only provides a guide, please modify it to meet your specific needs.
1. Prepare Hoechst staining solution
(1) Prepare Hoechst dye stock solution: Use DMSO to dissolve solid and prepare a 10 mg/mL Hoechst dye stock solution.
Note: Hoechst stock solution is recommended to be aliquoted and stored in the dark at -4°C or -20°C to avoid repeated freezing and thawing.
(2) Working solution preparation: Use preheated serum-free medium or buffer (such as HBSS or PBS) to dilute the stock solution and prepare a Hoechst working solution with a concentration of 10 μg/mL.
Note: Please adjust the concentration of Hoechst working fluid according to the actual situation and prepare it immediately.
2. Cell staining
2.1 Suspension cells (taking 6-well plate as an example)
(1) Centrifuge suspended cells at 1000g for 3-5 minutes. Discard the supernatant and wash twice with PBS for 5 minutes each time.
(2) Add 1 mL of Hoechst 33342 dye working solution and incubate at room temperature in the dark for 5-10 minutes.
(3) After the incubation, centrifuge at 1000g for 5 minutes, remove the supernatant, add PBS and wash 2-3 times, 5 minutes each time.
(4) Use serum-free cell culture medium or PBS to resuspend the cells and observe them through fluorescence microscopy or flow cytometry.
2.2 Adherent cells
(1) Culture adherent cells on sterile coverslips.
(2) Remove the coverslip from the culture medium, suck out the excess culture medium, and place the coverslip in a humid environment.
(3) Add 100uL of Hoechst dye working solution from one corner of the coverslip, shake gently to evenly cover all cells with the dye, and incubate at room temperature in the dark for 5-15 minutes.
(4) Aspirate away the dye working solution, wash the coverslip 2 to 3 times with culture solution, and observe with a fluorescence microscope.
3. Microscope detection: The excitation/emission light of Hoechst 33342 is 350/461nm respectively.

Precautions:
① For staining of fixed cells or tissue samples, the fixative needs to be removed by rinsing after fixation;
② Hoechst 33342 staining is usually performed after other staining. If no other staining is required, Hoechst 33342 staining is performed directly;
③ To slow down fluorescence quenching, it is recommended to use anti-fluorescence quenching mounting agent;
④ Fluorescent dyes all have quenching problems, so please try to avoid light;
⑤ Hoechst 33342 is irritating to the human body. For your safety and health, please wear a lab coat and disposable gloves when operating.
References:
[1]. Lisa C Crowley, Brooke J Marfell , Nigel J Waterhouse. Analyzing Cell Death by Nuclear Staining with Hoechst 33342. 2016 Sep 1;2016(9). doi: 10.1101/pdb.prot087205.

Chemical Properties of Hoechst 33342 analog 2

Cas No. 106050-84-4 SDF
Canonical SMILES OC1=CC=C(C2=NC3=CC(C4=NC5=CC(N6CCN(C)CC6)=CC=C5N4)=CC=C3N2)C=C1I
Formula C25H23IN6O M.Wt 550.39
Solubility DMSO: ≥ 57 mg/mL (103.56 mM) Storage 4°C, protect from light
General tips Please select the appropriate solvent to prepare the stock solution according to the solubility of the product in different solvents; once the solution is prepared, please store it in separate packages to avoid product failure caused by repeated freezing and thawing.Storage method and period of the stock solution: When stored at -80°C, please use it within 6 months; when stored at -20°C, please use it within 1 month.
To increase solubility, heat the tube to 37°C and then oscillate in an ultrasonic bath for some time.
Shipping Condition Evaluation sample solution: shipped with blue ice. All other sizes available: with RT, or with Blue Ice upon request.

Complete Stock Solution Preparation Table of Hoechst 33342 analog 2

Prepare stock solution
1 mg 5 mg 10 mg
1 mM 1.8169 mL 9.0845 mL 18.1689 mL
5 mM 363.4 μL 1.8169 mL 3.6338 mL
10 mM 181.7 μL 908.4 μL 1.8169 mL
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In vivo Formulation Calculator (Clear solution) of Hoechst 33342 analog 2

Step 1: Enter information below (Recommended: An additional animal making an allowance for loss during the experiment)

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Working concentration: mg/ml;

Method for preparing DMSO master liquid: mg drug pre-dissolved in μL DMSO ( Master liquid concentration mg/mL, Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug. )

Method for preparing in vivo formulation: Take μL DMSO master liquid, next addμL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL saline, mix and clarify.

Method for preparing in vivo formulation: Take μL DMSO master liquid, next add μL Corn oil, mix and clarify.

Note: 1. Please make sure the liquid is clear before adding the next solvent.
2. Be sure to add the solvent(s) in order. You must ensure that the solution obtained, in the previous addition, is a clear solution before proceeding to add the next solvent. Physical methods such as vortex, ultrasound or hot water bath can be used to aid dissolving.
3. All of the above co-solvents are available for purchase on the GlpBio website.

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Average Rating: 5 ★★★★★ (Based on Reviews and 37 reference(s) in Google Scholar.)

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